Katie’s functions for sharing across projects
Note: This file is automatically generated. Please do not edit manually.
Last Updated 2020-10-29 by Adam Lu
Instructions for syncing this directory to your local machine:
# Add this directory as a submodule:
git submodule add https://github.com/blabuva/Katies_Functions.git
# Update the submodule in the future
git submodule foreach git pull origin master
There are 2 MATLAB scripts in this directory:
- access_attach.m: Make Second Time Column for variables
- Adam_spikes.m: Read file to alldata
- addCentroidOnesToBox.m:
- atfFixer.m:
- AZ_raster.m:
- binKTFit.m: ccc
- binSpks.m: ccc
- blankWithCentroids.m: gotta reverse centroidsMAT to conform with X-Y IJ coordinates
- boxCropper.m:
- BrettSarahPoster.m:
- C23_raster.m:
- cell_access.m: ccc
- cell_data2.m: Get abf files
- cell_dataCell_Gapfree.m: Get abf files
- cell_data.m: Get abf files
- cell_sorter.m: load XL params
- center_point.m: save coordinates
- confplot_katie.m: CONFPLOT Linear plot with continuous confidence/error boundaries.
- count_centroids_plot.m:
- countIJbins.m:
- crosscorrex.m:
- ethx_immuno.m:
- figureOutMyCircle.m:
- findCentroids.m: Convert IJ centroid info to matlab centroid info
- FIplotter.m: save ‘FIplotter.mat’
- GABAB_puff_population.m: Load xcel file
- IJcellcounter2.m: ccc
- IJcellcounter.m: get centroids from xl file
- IJfigMaker.m:
- IJimageConverter.m:
- IMfigSizes.m:
- imLogfileString.m: IMPORTFILE Import numeric data from a text file as a matrix.
- imLogfileStrong.m: IMPORTFILE Import numeric data from a text file as a matrix.
- initialPassSpikes.m: (1) Must be a local maximum higher than the previous local minimum
- ISIcalc.m: ccc
- jaxtracter.m: get centroids from xl file
- JFUBinner.m:
- John_fu.m: load abf file
- kaccessG.m: ccc
- kaccess.m: ccc
- katies_cells.m:
- katiesColors.m:
- katpatch.m:
- kill_outies.m: ccc
- KTFit.m:
- linePlotCaller.m:
- line_plot_katie2.m: function [meanC,meanD,stdErrC,stdErrD] = line_plot_katie2(control, drug) ;
- line_plot_katie3.m: load ‘data.mat’
- line_plot_katie4.m: load ‘data.mat’
- line_plot_katie6.m: load ‘data.mat’
- line_plot_katie7.m: load ‘data.mat’
- line_plot_katie8.m: load ‘data.mat’
- line_plot_katie9.m: load ‘data.mat’
- line_plot_katie_colors.m: load ‘data.mat’
- line_plot_katieDoubleChevA.m: ccc
- line_plot_katieDoubleChevB.m: load ‘data.mat’
- line_plot_katieDoubleChev.m: load ‘data.mat’
- line_plot_katie.m: load ‘data.mat’
- line_plot_mark.m: ccc
- LowGlucoseSpikes.m: function [] = LowGlucoseSpikes ;
- LtoPix.m: define pixel dimensions
- make_me_matrix.m:
- matdirload.m:
- nanFixa.m: save(‘/home/katie/nanFixaTemp’)
- norm_phases.m: Normalize
- no_stats.m: basal=60*5;
- pclamp_Vm_changes.m:
- peteTest.m:
- picWithCentroids.m: gotta reverse centroidsMAT to conform with X-Y IJ coordinates
- Pleth_correlation.m:
- plotBinnedIJ.m: ax3 = subplot(4,6,spSpot)
- plotHC.m:
- pop_dat_pretable.m: Grab Stuff to plot
- pop_dat_tablemaker.m: Grab Stuff to plot
- pop_plotter_start.m: Grab Stuff to plot
- population_cell_data.m: Grab mat files from cell_sorter
- Population_cell_data.m:
- readATF.m:
- respFreqBinner.m:
- secondPassSpikes.m:
- spike_conditions.m:
- spike_detection_katie.m: load data.m
- spikeMeanFreq.m: save(‘info’);
- spikePlot.m: save(‘spikeInfo’,’sweepTimeCol’,’Spk’);
- spikes_currentinj2.m: save spikes.mat
- spikes_currentinj.m: save spikes.mat
- spikes.m: function [spike_data] = spikes_currentinj(pn,fn,Kexp);
- spkFinder.m: ccc
- splotter.m: save ‘splotter.mat’
- std_dev.m:
- std_err.m:
- svector.m:
- sweepsFile.m: load var.mat
- sweeps.m: load var.mat
- test_analysis_0507.m:
- test.m:
- Threshes_cell.m: THRESHES_CELL MATLAB code for Threshes_cell.fig
- threshing.m: — Executes just before paramsBluser is made visible.
- trimTheBox.m: ccc
- ventricle_centroid_fig.m: Load ventricle data
- ventricles.m:
- WAG_bicarbBins.m:
- WAG_CNO_Binned10hours.m:
- zero_column.m: